Node 51
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	1	0	G	1
6	0.01	0	0.99	0	G	0.99
7	0.98	0.01	0	0	A	0.98
8	0	0	0	1	T	1
9	0	0.98	0	0.02	C	0.98
10	0.06	0.93	0	0.01	C	0.93
11	0	0	0	1	T	1
12	0	1	0	0	C	1
13	0	0	1	0	G	1
14	1	0	0	0	A	1
15	0	0.03	0	0.97	T	0.97
16	1	0	0	0	A	1
17	1	0	0	0	A	1
18	0	1	0	0	C	1
19	0	0	0	1	T	1
20	0	0	0	1	T	1
21	1	0	0	0	A	1
22	0	0	1	0	G	1
23	1	0	0	0	A	1
24	0.89	0	0.11	0	A	0.89
25	0	1	0	0	C	1
26	1	0	0	0	A	1
27	0	0	1	0	G	1
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	1	0	0	C	1
31	0	1	0	0	C	1
32	0.15	0	0.85	0	G	0.85
33	0.04	0.01	0.95	0	G	0.95
34	0	1	0	0	C	1
35	1	0	0	0	A	1
36	0.05	0	0.95	0	G	0.95
37	0.26	0.01	0.72	0	G	0.72
38	0	0	0	1	T	1
39	0	0.26	0	0.74	T	0.74
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.98	0	0.02	C	0.98
43	0	0	1	0	G	1
44	0	1	0	0	C	1
45	0	0.89	0	0.1	C	0.89
46	0	0	0	1	T	1
47	0	1	0	0	C	1
48	0	0.27	0	0.72	T	0.72
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0.03	0.14	0.06	0.77	T	0.77
52	0.01	0.98	0	0	C	0.98
53	0.03	0	0.97	0	G	0.97
54	0.39	0.04	0.56	0.01	G	0.56
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	0.94	0	0.06	0	A	0.94
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	0	1	0	0	C	1
62	1	0	0	0	A	1
63	0.03	0	0.97	0	G	0.97
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	1	0	0	C	1
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	1	0	0	C	1
70	0.16	0	0.84	0	G	0.84
71	0	0	0	1	T	1
72	0	0.07	0	0.92	T	0.92
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	1	0	0	0	A	1
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.01	0	0.98	0	G	0.98
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0	0	1	T	1
82	0.01	0	0.99	0	G	0.99
83	1	0	0	0	A	1
84	0.98	0	0.01	0	A	0.98
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0.01	0	0.99	T	0.99
88	1	0	0	0	A	1
89	0	0	0	1	T	1
90	0	0.98	0	0.02	C	0.98
91	0	0	1	0	G	1
92	1	0	0	0	A	1
93	0	0.99	0	0.01	C	0.99
94	1	0	0	0	A	1
95	1	0	0	0	A	1
96	0	0.98	0	0.02	C	0.98
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	0.01	0	0.99	T	0.99
100	0	1	0	0	C	1
101	1	0	0	0	A	1
102	0.01	0	0.99	0	G	0.99
103	0	1	0	0	C	1
104	0	1	0	0	C	1
105	0.03	0.81	0.01	0.15	C	0.81
106	0	0	1	0	G	1
107	0	0	1	0	G	1
108	0	1	0	0	C	1
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0	0.97	0.01	0.01	C	0.97
112	0	0	1	0	G	1
113	0	1	0	0	C	1
114	0.01	0.62	0.04	0.33	C	0.62
115	0	1	0	0	C	1
116	1	0	0	0	A	1
117	0	0.99	0	0.01	C	0.99
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0	0.94	0.01	0.05	C	0.94
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0	0.98	0	0.02	C	0.98
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0.01	0.09	0.08	0.81	T	0.81
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0	0	1	T	1
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.24	0.21	0.13	0.41	T	0.41
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0	0	1	0	G	1
136	0.99	0	0.01	0	A	0.99
137	0	1	0	0	C	1
138	0.01	0.67	0.1	0.22	C	0.67
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.05	0	0.95	T	0.95
142	0	1	0	0	C	1
143	0	0	1	0	G	1
144	0	1	0	0	C	1
145	0	0	1	0	G	1
146	0	0	0	1	T	1
147	0	0	1	0	G	1
148	0	0	1	0	G	1
149	1	0	0	0	A	1
150	0.68	0.01	0.31	0	A	0.68
151	1	0	0	0	A	1
152	0	1	0	0	C	1
153	0.32	0.57	0.06	0.05	C	0.57
154	0	0	1	0	G	1
155	1	0	0	0	A	1
156	0	0.99	0	0.01	C	0.99
157	0.01	0.01	0	0.98	T	0.98
158	0	1	0	0	C	1
159	0	0.79	0	0.21	C	0.79
160	0.01	0	0.99	0	G	0.99
161	0	1	0	0	C	1
162	0.02	0.61	0.34	0.03	C	0.61
163	0	0	0	0	-	0
164	0	0	0	0	-	0
165	0	0	0	0	-	0
166	0.91	0	0.09	0	A	0.91
167	0	1	0	0	C	1
168	0	0.99	0	0	C	0.99
169	0	0	1	0	G	1
170	1	0	0	0	A	1
171	0	0.03	0	0.97	T	0.97
172	0	0	1	0	G	1
173	0	1	0	0	C	1
174	0.2	0	0.8	0	G	0.8
175	0	1	0	0	C	1
176	0	0	0	1	T	1
177	0.01	0	0.99	0	G	0.99
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.01	0	0.98	T	0.98
181	0.99	0	0.01	0	A	0.99
182	0	0.99	0	0.01	C	0.99
183	0	1	0	0	C	1
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0.03	0.14	0.73	0.1	G	0.73
187	0	1	0	0	C	1
188	1	0	0	0	A	1
189	0	0	0	1	T	1
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0.01	0.91	0	0.08	C	0.91
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.26	0	0.73	T	0.73
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	0.49	0	0.51	T	0.51
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	0.01	0	0.99	T	0.99
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0.72	0	0.28	0	A	0.72
205	0	0	1	0	G	1
206	0	0	0	1	T	1
207	0	0	1	0	G	1
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0	0	1	T	1
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	1	0	0	C	1
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	1	0	0	C	1
217	0	1	0	0	C	1
218	0	0	0	1	T	1
219	0	0	1	0	G	1
220	0	1	0	0	C	1
221	1	0	0	0	A	1
222	0.99	0	0.01	0	A	0.99
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0.11	0	0.88	0	G	0.88
226	0	1	0	0	C	1
227	0.94	0	0.06	0	A	0.94
228	0.16	0	0.84	0	G	0.84
229	0	1	0	0	C	1
230	1	0	0	0	A	1
231	1	0	0	0	A	1
232	1	0	0	0	A	1
233	1	0	0	0	A	1
234	1	0	0	0	A	1
235	1	0	0	0	A	1
236	0	0	0	1	T	1
237	0.01	0.01	0	0.98	T	0.98
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0.96	0	0.04	0	A	0.96
241	0	0	0	1	T	1
242	1	0	0	0	A	1
243	0	0.01	0	0.99	T	0.99
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.01	0.92	0.06	0.02	C	0.92
247	0.01	0.01	0.98	0	G	0.98
248	0	1	0	0	C	1
249	0.01	0.95	0.02	0.02	C	0.95
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	1	0	0	0	A	1
253	0.01	0	0.99	0	G	0.99
254	0.99	0	0.01	0	A	0.99
255	0.04	0.11	0.43	0.43	T	0.43
256	0.87	0.01	0.12	0	A	0.87
257	0.32	0.64	0.02	0.02	C	0.64
258	0.11	0	0.87	0.02	G	0.87
259	0	0.37	0	0.63	T	0.63
260	0	0	0	1	T	1
261	0.1	0.01	0.88	0	G	0.88
262	0	1	0	0	C	1
263	1	0	0	0	A	1
264	0	0	1	0	G	1
265	0.01	0	0.99	0	G	0.99
266	0	0.01	0	0.99	T	0.99
267	0.22	0.15	0.61	0.02	G	0.61
268	0	0	1	0	G	1
269	0	0	0	1	T	1
270	0.02	0.02	0.22	0.73	T	0.73
271	0	0	1	0	G	1
272	1	0	0	0	A	1
273	0.96	0	0.04	0	A	0.96
274	0	0	0	1	T	1
275	0.99	0	0.01	0	A	0.99
276	0	0.05	0	0.95	T	0.95
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.01	0	0.99	T	0.99
280	0	1	0	0	C	1
281	0	0	1	0	G	1
282	0	0.98	0	0.02	C	0.98
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0	0	1	T	1
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	1	0	0	0	A	1
289	1	0	0	0	A	1
290	0	1	0	0	C	1
291	0	0.98	0	0.02	C	0.98
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	0.02	0	0.98	T	0.98
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0	0.92	0	0.08	C	0.92
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	1	0	0	0	A	1
301	0	0	0	1	T	1
302	1	0	0	0	A	1
303	0	0.03	0	0.97	T	0.97
304	0	1	0	0	C	1
305	0	0	0	1	T	1
306	0.01	0	0.99	0	G	0.99
307	1	0	0	0	A	1
308	1	0	0	0	A	1
309	0.99	0	0.01	0	A	0.99
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0	0.68	0	0.32	C	0.68
313	0	0.01	0	0.99	T	0.99
314	0	0	1	0	G	1
315	0	0.95	0	0.05	C	0.95
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0.98	0	0.01	0.01	A	0.98
322	0.74	0	0.26	0	A	0.74
323	1	0	0	0	A	1
324	0.74	0.25	0.01	0.01	A	0.74
325	1	0	0	0	A	1
326	0	1	0	0	C	1
327	0	1	0	0	C	1
328	0	0	1	0	G	1
329	0	0	0	1	T	1
330	0.13	0	0.86	0.01	G	0.86
331	0	0.01	0.99	0	G	0.99
332	1	0	0	0	A	1
333	0.04	0	0.96	0	G	0.96
334	0	0	1	0	G	1
335	0	0	0	1	T	1
336	0.03	0.16	0.41	0.4	G	0.41
337	0	1	0	0	C	1
338	0.99	0	0.01	0	A	0.99
339	0	1	0	0	C	1
340	0	0	1	0	G	1
341	1	0	0	0	A	1
342	1	0	0	0	A	1
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0.82	0	0.18	0	A	0.82
346	0	1	0	0	C	1
347	1	0	0	0	A	1
348	0.21	0	0.79	0	G	0.79
349	1	0	0	0	A	1
350	0	0	0	1	T	1
351	0	0	0.99	0	G	0.99
352	0	0	1	0	G	1
353	0	0	0	1	T	1
354	0.04	0.01	0.8	0.15	G	0.8
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0	0	1	T	1
358	0	0	0	1	T	1
359	0	0	1	0	G	1
360	0	0.96	0	0.04	C	0.96
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0	0.88	0	0.12	C	0.88
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	1	0	0	C	1
367	0	0.98	0	0.01	C	0.98
368	1	0	0	0	A	1
369	0	0	0	1	T	1
370	0	0	1	0	G	1
371	1	0	0	0	A	1
372	1	0	0	0	A	1
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0	0.97	0.01	0.02	C	0.97
376	0	0	0	1	T	1
377	1	0	0	0	A	1
378	0	0.9	0	0.1	C	0.9
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0	0.08	0.01	0.91	T	0.91
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	0	0	1	T	1
385	1	0	0	0	A	1
386	0	0	0	1	T	1
387	0	0.99	0	0.01	C	0.99
388	0	0	0	1	T	1
389	0	0	1	0	G	1
390	0	0.2	0	0.8	T	0.8
391	0.99	0	0.01	0	A	0.99
392	1	0	0	0	A	1
393	0	0.01	0	0.99	T	0.99
394	0.7	0.11	0.18	0.01	A	0.7
395	1	0	0	0	A	1
396	0	1	0	0	C	1
397	0	0	0.99	0	G	0.99
398	0	1	0	0	C	1
399	0.37	0.02	0.49	0.12	G	0.49
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.66	0.02	0.31	0	A	0.66
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	1	0	0	0	A	1
410	1	0	0	0	A	1
411	1	0	0	0	A	1
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	1	0	0	0	A	1
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0	0.99	0.01	0	C	0.99
418	0	0	1	0	G	1
419	0	0	0	1	T	1
420	0.99	0	0.01	0	A	0.99
421	0	1	0	0	C	1
422	0	0	0	1	T	1
423	0	1	0	0	C	1
424	1	0	0	0	A	1
425	1	0	0	0	A	1
426	1	0	0	0	A	1
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.03	0.32	0.63	0.02	G	0.63
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0	1	0	0	C	1
433	1	0	0	0	A	1
434	0	0	0	1	T	1
435	0	0.75	0	0.25	C	0.75
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	1	0	0	0	A	1
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0	0.01	0	0.99	T	0.99
442	0	0	1	0	G	1
443	0	0	1	0	G	1
444	0	0	0	1	T	1
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0	0	1	T	1
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	0.28	0	0.72	T	0.72
451	0	1	0	0	C	1
452	1	0	0	0	A	1
453	0	0.01	0	0.99	T	0.99
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.97	0	0.03	C	0.97
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	1	0	0	0	A	1
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGAGGATCCTCGATAACTTAGAACAGTTCCGGCAGGTTTACGCCTCTGGTCGGAAATGGCAGCGCTGCGTTGAAGCGATTGAAAATATCGACAACATTCAGCCCGGCGTCGCCCACTCCATCGGTGATTCTCTGACCTATCGCGTGGAAACCGACTCCGCC---ACCGATGCGCTGTTTACCGGGCATCGCCGTTATTTTGAAGTGCATTACTACCTGCAAGGGCAGCAAAAAATTGAATATGCCGCCAAAGATACGTTGCAGGTGGTTGAATATTATCGCGATGAAACCGATCGCGAATATCTGAAAGGCTGC---GGAAAAACCGTGGAGGTGCACGAAGGACAGATGGTGATTTGCGACAACCATGAAGCCTACCGTTTTATCTGTAATAACGCGGTA------AAAAAAGTCGTACTCAAAGTGACCATCGAAGATGGTTATTTTCATAACAAATAA

The most probable DNA sequence without gaps is:
ATGAGGATCCTCGATAACTTAGAACAGTTCCGGCAGGTTTACGCCTCTGGTCGGAAATGGCAGCGCTGCGTTGAAGCGATTGAAAATATCGACAACATTCAGCCCGGCGTCGCCCACTCCATCGGTGATTCTCTGACCTATCGCGTGGAAACCGACTCCGCCACCGATGCGCTGTTTACCGGGCATCGCCGTTATTTTGAAGTGCATTACTACCTGCAAGGGCAGCAAAAAATTGAATATGCCGCCAAAGATACGTTGCAGGTGGTTGAATATTATCGCGATGAAACCGATCGCGAATATCTGAAAGGCTGCGGAAAAACCGTGGAGGTGCACGAAGGACAGATGGTGATTTGCGACAACCATGAAGCCTACCGTTTTATCTGTAATAACGCGGTAAAAAAAGTCGTACTCAAAGTGACCATCGAAGATGGTTATTTTCATAACAAATAA

The accuracy score for that sequence is 0.964444444444445

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 4.10088182006414e-09.
The natural log of that probability is -19.3120638082977.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
R	1	A	0	9999	
I	0.98	L	0.01	98	
L	0.93	I	0.06	15.5	
D	1	A	0	9999	
N	1	A	0	9999	
L	1	A	0	9999	
E	1	A	0	9999	
Q	1	A	0	9999	
F	1	A	0	9999	
R	0.85	Q	0.1485	5.72390572390572	
Q	1	A	0	9999	
V	0.72	I	0.26	2.76923076923077	
Y	1	A	0	9999	
A	0.99	R	0	9999	
S	0.99	A	0	9999	
G	1	A	0	9999	
R	0.959815	Q	0.02793	34.3650196920874	
K	1	A	0	9999	
W	1	A	0	9999	
Q	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
V	0.8316	I	0.1584	5.25	
E	1	A	0	9999	
A	0.99	R	0	9999	
I	1	A	0	9999	
E	0.9801	K	0.0099	99	
N	1	A	0	9999	
I	1	A	0	9999	
D	1	A	0	9999	
N	1	A	0	9999	
I	1	A	0	9999	
Q	1	A	0	9999	
P	1	A	0	9999	
G	1	A	0	9999	
V	0.99	A	0	9999	
A	1	R	0	9999	
H	1	A	0	9999	
S	1	A	0	9999	
I	1	A	0	9999	
G	0.99	A	0	9999	
D	1	A	0	9999	
S	0.99	A	0	9999	
L	1	A	0	9999	
T	0.99	A	0.01	99	
Y	1	A	0	9999	
R	1	A	0	9999	
V	1	A	0	9999	
E	0.99	D	0.01	99	
T	1	A	0	9999	
D	1	A	0	9999	
S	0.98	P	0.01	98	
A	0.99	T	0.01	99	
	0	-	0	0
T	0.9009	A	0.0891	10.1111111111111	
D	1	A	0	9999	
A	1	R	0	9999	
L	1	A	0	9999	
F	0.99	A	0	9999	
T	0.9801	A	0.0099	99	
G	1	A	0	9999	
H	1	A	0	9999	
R	1	A	0	9999	
R	0.99	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
E	1	A	0	9999	
V	1	A	0	9999	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
Q	1	A	0	9999	
G	0.99	A	0	9999	
Q	0.94	R	0.06	15.6666666666667	
Q	1	A	0	9999	
K	1	A	0	9999	
I	1	A	0	9999	
E	1	A	0	9999	
Y	1	A	0	9999	
A	1.01	R	0	9999	
A	0.98	P	0.01	98	
K	1	A	0	9999	
D	0.529254	E	0.460647	1.14893617021277	Unreliable
T	0.5568	K	0.272832	2.04081632653061	
L	0.9837	F	0.0063	156.142857142857	
Q	1	A	0	9999	
V	0.9801	A	0.0099	99	
V	0.99	A	0	9999	
E	1	A	0	9999	
Y	0.99	C	0.01	99	
Y	1	A	0	9999	
R	1	A	0	9999	
D	1	A	0	9999	
E	1	A	0	9999	
T	1	A	0	9999	
D	1	A	0	9999	
R	1	A	0	9999	
E	1	A	0	9999	
Y	1	A	0	9999	
L	1	A	0	9999	
K	1	A	0	9999	
G	1	A	0	9999	
C	0.99	R	0.01	99	
	0	-	0	0
G	1	A	0	9999	
K	0.555	E	0.195	2.84615384615385	
T	1	A	0	9999	
V	1	A	0	9999	
E	0.99	Q	0.01	99	
V	1	A	0	9999	
H	0.99	R	0.01	99	
E	1	A	0	9999	
G	1	A	0	9999	
Q	1	A	0	9999	
M	0.99	A	0	9999	
V	1	A	0	9999	
I	1	A	0	9999	
C	1	A	0	9999	
D	1	A	0	9999	
N	1	A	0	9999	
H	0.98	Y	0.01	98	
E	1	A	0	9999	
A	1	R	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
F	1	A	0	9999	
I	1	A	0	9999	
C	1	A	0	9999	
N	0.99	D	0.01	99	
N	0.7	D	0.18	3.88888888888889	
A	0.99	R	0	9999	
V	0.99	A	0	9999	
	0	-	0	0
	0	-	0	0
K	1	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
V	1	A	0	9999	
L	1	A	0	9999	
K	1	A	0	9999	
V	1	A	0	9999	
T	1	A	0	9999	
I	1	A	0	9999	
E	1	A	0	9999	
D	1	A	0	9999	
G	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
H	1	A	0	9999	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MRILDNLEQFRQVYASGRKWQRCVEAIENIDNIQPGVAHSIGDSLTYRVETDSA-TDALFTGHRRYFEVHYYLQGQQKIEYAAKDTLQVVEYYRDETDREYLKGC-GKTVEVHEGQMVICDNHEAYRFICNNAV--KKVVLKVTIEDGYFHNKX

The most probable ancestral protein sequence without gaps is:
MRILDNLEQFRQVYASGRKWQRCVEAIENIDNIQPGVAHSIGDSLTYRVETDSATDALFTGHRRYFEVHYYLQGQQKIEYAAKDTLQVVEYYRDETDREYLKGCGKTVEVHEGQMVICDNHEAYRFICNNAVKKVVLKVTIEDGYFHNKX

The accuracy score for that sequence is 0.98078246

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 0.0307704484355905
The natural log of that probability is -3.48120051596204.

